Chemistry, asked by divyanshu5928, 1 year ago

How to color bonds by the strain?

Answers

Answered by aman6973
0
hey friend your answer is ###
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I need to create a figure of a molecule in which the bonds are colored in a RGB scale according to the values read from a data file. The data file contains, for example, the increase or decrease in the bond length compared to some reference structure. In this way, the intensity in a color range red-white-blue would be given by the difference between the relaxed and unrelaxed bond lengths, similarly to the figure attached.
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Answered by akashgang
0
HI HERE IS THE ANSWER

IT SHOULD BE POSSIBLE TO SEARCH CERTAIN DISTANCES BETWEEN TWO ATOM AND COLOR THOSE BONDS DIFFERENTLY WITH PYMOL , BUT IT WOULD INVOLVE SOME SCRIPTING.
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