Question

Where should jQuery code go in header or footer?

Answer 1

All scripts should be loaded last

In just about every case, it's best to place all your script references at the end of the page, just before </body>.

If you are unable to do so due to templating issues and whatnot, decorate your script tags with the defer attribute so that the browser knows to download your scripts after the HTML has been downloaded:

<script src="my.js" type="text/javascript" defer="defer"></script>