How to calculate the percentage of similarity among protein sequences?
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My answer is related to protein sequence alignment. When I use ClustalW for alignmnet I can see the identity percentage, strongly similar and weekly similar. But I want to find similarity percentage of all aligned sequence not Identity.
I goggled for software's which will help to find out algorithms to solve it, but I am unable to download them ex:MStatX this sounds promising to solve my problem but somehow I can not find the information to download it.
I even read about similarity Matrix which looks like one solution to calculate the percentage similarity of the sequence. Even for this I don't know where to find information to download any software's if any exist.
Can any one please help me in finding out proper tool or method to calculate the similarity percentage in multiple aligned sequence.
I goggled for software's which will help to find out algorithms to solve it, but I am unable to download them ex:MStatX this sounds promising to solve my problem but somehow I can not find the information to download it.
I even read about similarity Matrix which looks like one solution to calculate the percentage similarity of the sequence. Even for this I don't know where to find information to download any software's if any exist.
Can any one please help me in finding out proper tool or method to calculate the similarity percentage in multiple aligned sequence.
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