Question

Which are named boxes for storing the data
a) no output
b)hi
c)how are you
d)error​

Answer 1

DNase Hi-C uses DNase to randomly fragment the ordering, rather than using restriction fragments.

Explanation:

• DNase Hi-C uses DNase to randomly fragment the ordering, rather than using restriction fragments.

• This requires some care to handle in diffHic, as most functions rely on fragment assignments in several functions.

• To specify that the data square measure from a DNase Hi-C experiment, an empty GRanges object ought to be provided as the fragments in pairParam.

• Most functions will mechanically acknowledge that the knowledge square measure DNase Hi-C and behave fittingly.

• This reflects the fact that no restriction fragments square measure concerned during this analysis. Genome data can instead be extracted from the set lengths of the GRanges object.

• prepPseudoPairs and segmentGenome are deprecated in favor of preparePairs and emptyGenome, respectively.

• In the case of preparePairs, it will mechanically observe if the BAM file is to be treated as DNase Hi-C supported param$fragments.